Thursday 18 July 2013

Custom Peptide



Polyeptide synthesis became a more practical part of present-day scientific research following the advent of solid-phase polyeptide synthesis  techniques. 

The concept of solid-phasepolyeptide synthesis (SPPS) is to retain chemistry that has been proven in solution but to add a covalent attachment step that links the nascent peptide chain to an insoluble polymeric support (resin). Subsequently, the anchored peptide is extended by a series of addition cycles It is the essence of the solid-phase polyeptide synthesis approach that reactions are driven to completion by the use of excess soluble reagents, which can be removed by simple filtration and washing without manipulative losses. Once chain elongation has been completed, the crude peptide is released from the support.

In the early 1960s, Merrifield proposed the use of a polystyrene-based solid support for peptide synthesis. Polyeptides could be assembled stepwise from the C to N terminus using Nalpha-protected amino acids. From the 1960s through the 1980s, Boc-based SPPS was fine-tuned (Merrifield, 1986). This strategy has been utilized for synthesis of proteins such as interleukin-3 and active enzymes including ribonuclease A and all-L and all-D forms of HIV-1 aspartyl protease.

In 1972, Carpino introduced the 9-fluorenylmethoxycarbonyl (Fmoc) group for Nalpha protection (Carpino and Han, 1972). The Fmoc group requires moderate base for removal, and thus offered a chemically mild alternative to the acid-labile Boc group and in the late 1970s, the Fmoc group was adopted for solid-phase polypeptide synthesis applications. This milder conditions of Fmoc peptide chemistry as compared to Boc peptide chemistry—which include elimination of repetitive moderate acidolysis steps and the final strong acidolysis step—were envisioned as being more compatible with the synthesis of peptides that are susceptible to acid-catalyzed side reactions. In particular, the modification of the indole ring of Trp was viewed as a particular problem during Boc-based peptide synthesis (Barany and Merrifield, 1979), which could be alleviated using Fmoc chemistry. One example of the potential advantage of Fmoc chemistry for the synthesis of multiple-Trp-containing peptides was in the synthesis of gramicidin A. Gramicidin A, a pentadecapeptide containing four Trp residues, had been synthesized previously in low yields (5% to 24%) using Boc chemistry. The mild conditions of Fmoc chemistry dramatically improved the yields of gramicidin A, in some cases up to 87% (Fields et al., 1989, 1990). A second multiple-Trp-containing peptide, indolicidin, was successfully assembled in high yield by Fmoc chemistry (King et al., 1990). Thus, the mild conditions of Fmoc chemistry appeared to be advantageous for certain peptides, as compared with Boc chemistry.

The milder conditions of Fmoc peptide synthesis chemistry, along with improvements in the basic chemistry, have led to a shift in the chemistry employed by peptide laboratories. Possible reasons for the improved results were any combination of the following (Angeletti et al., 1997):
1.  The greater percentage of peptides synthesized by Fmoc chemistry, where cleavage conditions are less harsh.
2.  The use of different side-chain protecting group strategies that help reduce side reactions during cleavage.
3.  The use of cleavage protocols designed to minimize side reactions.
4.  More rigor and care in laboratory techniques.

The next step in the development of solid-phase polypeptide synthesis techniques includes applications for peptides containing non-native amino acids, post-translationally modified amino acids, and pseudoamino acids, as well as for organic molecules in general. Several areas of solid-phase synthesis need to be refined to allow for the successful construction of this next generation of biomolecules. The solid support must be versatile so that a great variety of solvents can be used, particularly for organic-molecule applications. Coupling reagents must be sufficiently rapid so that sterically hindered amino acids can be incorporated. Construction of polypeptides that contain amino acids bearing post-translational modifications should take advantage of the solid-phase approach. Finally, appropriate analytical techniques are needed to assure the proper composition of products.

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